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1

OpenFluDB, a database for human and animal influenza virus

Liechti, R., Gleizes, A., Kuznetsov, D., Bougueleret, L., Le Mercier, P., Bairoch, A., Xenarios, I.

Journal:

Year:

2010

Language:

english

File:

PDF, 1.13 MB

english, 2010

2

Plant species distributions along environmental gradients: do belowground interactions with fungi matter?

Pellissier, Loïc, Pinto-Figueroa, Eric, Niculita-Hirzel, Hélène, Moora, Mari, Villard, Lucas, Goudet, Jérome, Guex, Nicolas, Pagni, Marco, Xenarios, Ioannis, Sanders, Ian, Guisan, Antoine

Journal:

Frontiers in Plant Science

Year:

2013

Language:

english

File:

PDF, 860 KB

english, 2013

3

The UniProtKB/Swiss-Prot Tox-Prot program: A central hub of integrated venom protein data

Florence Jungo, Lydie Bougueleret, Ioannis Xenarios, Sylvain Poux

Journal:

Year:

2012

Language:

english

File:

PDF, 740 KB

english, 2012

4

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

Vizcaíno, Juan A, Deutsch, Eric W, Wang, Rui, Csordas, Attila, Reisinger, Florian, Ríos, Daniel, Dianes, José A, Sun, Zhi, Farrah, Terry, Bandeira, Nuno, Binz, Pierre-Alain, Xenarios, Ioannis, Eisenac

Journal:

Nature Biotechnology

Year:

2014

Language:

english

File:

PDF, 516 KB

english, 2014

5

Soil fungal communities of grasslands are environmentally structured at a regional scale in the Alps

Pellissier, L., Niculita-Hirzel, H., Dubuis, A., Pagni, M., Guex, N., Ndiribe, C., Salamin, N., Xenarios, I., Goudet, J., Sanders, I. R., Guisan, A.

Journal:

Molecular Ecology

Year:

2014

Language:

english

File:

PDF, 1.34 MB

english, 2014

6

Drug Design Workshop: A Web-Based Educational Tool To Introduce Computer-Aided Drug Design to the General Public

Daina, Antoine, Blatter, Marie-Claude, Baillie Gerritsen, Vivienne, Palagi, Patricia M., Marek, Diana, Xenarios, Ioannis, Schwede, Torsten, Michielin, Olivier, Zoete, Vincent

Journal:

Journal of Chemical Education

Year:

2017

Language:

english

File:

PDF, 7.63 MB

english, 2017

7

Gender differentiated impacts from weather extremes: Insight from rural communities in South India

Xenarios, Stefanos, Kakumanu, Krishna Reddy, Nagothu, Udaya Sekhar, Kotapati, Gurava Reddy

Journal:

Environmental Development

Year:

2017

Language:

english

File:

PDF, 667 KB

english, 2017

8

The ins and outs of eukaryotic viruses: Knowledge base and ontology of a viral infection

Hulo, Chantal, Masson, Patrick, de Castro, Edouard, Auchincloss, Andrea H., Foulger, Rebecca, Poux, Sylvain, Lomax, Jane, Bougueleret, Lydie, Xenarios, Ioannis, Le Mercier, Philippe, Alvisi, Gualtiero

Journal:

Year:

2017

Language:

english

File:

PDF, 3.00 MB

english, 2017

9

Bacterial Virus Ontology; Coordinating across Databases

Hulo, Chantal, Masson, Patrick, Toussaint, Ariane, Osumi-Sutherland, David, de Castro, Edouard, Auchincloss, Andrea, Poux, Sylvain, Bougueleret, Lydie, Xenarios, Ioannis, Le Mercier, Philippe

Journal:

Year:

2017

Language:

english

File:

PDF, 3.90 MB

english, 2017

10

Survey on Household Solid Waste Sorting at Source in Developing Economies: A Case Study of Nur-Sultan City in Kazakhstan

Sarbassov,, Sagalova,, Tursunov,, Venetis,, Xenarios,, Inglezakis,

Journal:

Year:

2019

Language:

english

File:

PDF, 3.90 MB

english, 2019

11

Differential reactivity of TCR Vβ10 alleles to a mouse mammary tumor virus superantigen

Ivan Maillard, Ioannis Xenarios, Heidi Diggelmann, Hans Acha Orbea

Journal:

European Journal of Immunology

Year:

1998

Language:

english

File:

PDF, 191 KB

english, 1998

12

The Use of Environmental Policy Instruments for Urban Wastewater Control: Evidences from an International Survey

Stefanos Xenarios, Kostas Bithas

Journal:

Environmental Policy and Governance

Year:

2012

Language:

english

File:

PDF, 402 KB

english, 2012

13

324: Adult Sexual Assault Is Rarely Reported to the Police

S. Seccurro, D. Wiener, B. Santos, S. Xenarios, L. Kindley, K. Shah

Journal:

Annals of Emergency Medicine

Year:

2010

Language:

english

File:

PDF, 116 KB

english, 2010

14

Extrapolating the benefits arising from the compliance of urban wastewater systems with the Water Framework Directive

Stefanos Xenarios, Konstantinos Bithas

Journal:

Year:

2007

Language:

english

File:

PDF, 179 KB

english, 2007

15

Protein interaction databases

Ioannis Xenarios, David Eisenberg

Journal:

Current Opinion in Biotechnology

Year:

2001

Language:

english

File:

PDF, 106 KB

english, 2001

16

Broadening the horizon – level 2.5 of the HUPO-PSI format for molecular interactions

Samuel Kerrien, Sandra Orchard, Luisa Montecchi-Palazzi, Bruno Aranda, Antony F Quinn, Nisha Vinod, Gary D Bader, Ioannis Xenarios, Jérôme Wojcik, David Sherman, Mike Tyers, John J Salama, Susan Moore

Journal:

Year:

2007

Language:

english

File:

PDF, 1.53 MB

english, 2007

17

A method for the generation of standardized qualitative dynamical systems of regulatory networks

Luis Mendoza, Ioannis Xenarios

Journal:

Theoretical Biology and Medical Modelling

Year:

2006

Language:

english

File:

PDF, 1.27 MB

english, 2006

18

Detection and identification of plasma proteins that bind GlialCAM using ProteinChip™ Arrays, SELDI-TOF MS, and nano-LC MS/MS

Linda Favre-Kontula, Pascale Sattonnet-Roche, Edith Magnenat, Amanda E. I. Proudfoot, Ursula Boschert, Ioannis Xenarios, Francis Vilbois, Bruno Antonsson

Journal:

Year:

2008

Language:

english

File:

PDF, 533 KB

english, 2008

19

Improving the sensitivity of the sequence profile method

Roland Lüthy, Ioannis Xenarios, Philipp Bucher

Journal:

Protein Science

Year:

1994

Language:

english

File:

PDF, 632 KB

english, 1994

20

Welfare Improvisation from the Receiving Waters of Urban Wastewater Systems in the Context of the Water Framework Directive

Stefanos Xenarios, Kostas Bithas

Journal:

Water Resources Management

Year:

2009

Language:

english

File:

PDF, 401 KB

english, 2009

21

10.1038/35015694

Eisenberg, David, Marcotte, Edward M., Xenarios, Ioannis, Yeates, Todd O.

Journal:

Year:

2000

Language:

english

File:

PDF, 227 KB

english, 2000

22

10.1038/86567

Klein, Michael A., Kaeser, Pascal S., Schwarz, Petra, Weyd, Heiko, Xenarios, Ioannis, Zinkernagel, Rolf M., Carroll, Michael C., Verbeek, J. Sjef, Botto, Marina, Walport, Mark J., Molina, Hector, Kali

Journal:

Nature Medicine

Year:

2001

Language:

english

File:

PDF, 4.62 MB

english, 2001

23

Interplays between mouse mammary tumor virus and the cellular and humoral immune response

Hans Acha-Orbea, Daniela Finke, Antoine Attinger, Sandie Schmid, Nathalie Wehrli, Sonia Vacheron, Ioannls Xenarios, Leonardo Scarpellino, Kai-Michael Toellner, Ian C. M. MacLennan, Sanjiv A. Luther

Journal:

Immunological Reviews

Year:

1999

Language:

english

File:

PDF, 9.17 MB

english, 1999

24

Improving pluralism in Multi Criteria Decision Aid approach through Focus Group technique and Content Analysis

S. Xenarios, I. Tziritis

Journal:

Ecological Economics

Year:

2007

Language:

english

File:

PDF, 349 KB

english, 2007

25

MIMAS 3.0 is a Multiomics Information Management and Annotation System

Alexandre Gattiker, Leandro Hermida, Robin Liechti, Ioannis Xenarios, Olivier Collin, Jacques Rougemont, Michael Primig

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 280 KB

english, 2009

26

Dynamic simulation of regulatory networks using SQUAD

Alessandro Di Cara, Abhishek Garg, Giovanni De Micheli, Ioannis Xenarios, Luis Mendoza

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 1.26 MB

english, 2007

27

Probabilistic base calling of Solexa sequencing data

Jacques Rougemont, Arnaud Amzallag, Christian Iseli, Laurent Farinelli, Ioannis Xenarios, Felix Naef

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 504 KB

english, 2008

28

Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins

Ralf Landgraf, Ioannis Xenarios, David Eisenberg

Journal:

Journal of Molecular Biology

Year:

2001

Language:

english

File:

PDF, 660 KB

english, 2001

29

ENFIN – A European network for integrative systems biology

Pascal Kahlem, Andrew Clegg, Florian Reisinger, Ioannis Xenarios, Henning Hermjakob, Christine Orengo, Ewan Birney

Journal:

Comptes Rendus Biologies

Year:

2009

Language:

english

File:

PDF, 973 KB

english, 2009

30

Microarray Deacetylation Maps Determine Genome-Wide Functions for Yeast Histone Deacetylases

Daniel Robyr, Yuko Suka, Ioannis Xenarios, Siavash K. Kurdistani, Amy Wang, Noriyuki Suka, Michael Grunstein

Journal:

Year:

2002

Language:

english

File:

PDF, 470 KB

english, 2002

31

IL-4 Rapidly Produced by Vβ4 Vα8 CD4+ T Cells Instructs Th2 Development and Susceptibility to Leishmania major in BALB/c Mice

Pascal Launois, Ivan Maillard, Sabine Pingel, Kristin G. Swihart, Ioannis Xénarios, Hans Acha-Orbea, Heidi Diggelmann, Richard M. Locksley, H.Robson MacDonald, Jacques A. Louis

Journal:

Year:

1997

Language:

english

File:

PDF, 151 KB

english, 1997

32

Database resources for the tuberculosis community

Lew, Jocelyne M., Mao, Chunhong, Shukla, Maulik, Warren, Andrew, Will, Rebecca, Kuznetsov, Dmitry, Xenarios, Ioannis, Robertson, Brian D., Gordon, Stephen V., Schnappinger, Dirk, Cole, Stewart T., Sob

Journal:

Year:

2013

Language:

english

File:

PDF, 362 KB

english, 2013

33

Microarray analysis of isolated human islet transcriptome in type 2 diabetes and the role of the ubiquitin–proteasome system in pancreatic beta cell dysfunction

Bugliani, Marco, Liechti, Robin, Cheon, Hwanju, Suleiman, Mara, Marselli, Lorella, Kirkpatrick, Clare, Filipponi, Franco, Boggi, Ugo, Xenarios, Ioannis, Syed, Farooq, Ladriere, Laurence, Wollheim, Cla

Journal:

Molecular and Cellular Endocrinology

Year:

2013

Language:

english

File:

PDF, 917 KB

english, 2013

34

A robust second-generation genome-wide test for fetal aneuploidy based on shotgun sequencing cell-free DNA in maternal blood

Guex, N., Iseli, C., Syngelaki, A., Deluen, C., Pescia, G., Nicolaides, K. H., Xenarios, I., Conrad, B.

Journal:

Prenatal Diagnosis

Year:

2013

Language:

english

File:

PDF, 211 KB

english, 2013

35

Integrative knowledge management to enhance pharmaceutical R&D

Marti-Solano, Maria, Birney, Ewan, Bril, Antoine, Pasqua, Oscar Della, Kitano, Hiroaki, Mons, Barend, Xenarios, Ioannis, Sanz, Ferran

Journal:

Nature Reviews Drug Discovery

Year:

2014

Language:

english

File:

PDF, 587 KB

english, 2014

36

T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension

Di Tommaso, P., Moretti, S., Xenarios, I., Orobitg, M., Montanyola, A., Chang, J.-M., Taly, J.-F., Notredame, C.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 2.04 MB

english, 2011

37

The Human Diabetes Proteome Project (HDPP): From network biology to targets for therapies and prevention

Topf, F., Schvartz, D., Gaudet, P., Priego-Capote, F., Zufferey, A., Turck, N., Binz, P.-A., Fontana, P., Wiederkehr, A., Finamore, F., Xenarios, I., Goodlett, D., Kussmann, M., Bergsten, P., Sanchez,

Journal:

Advances in Integrative Medicine

Year:

2013

Language:

english

File:

PDF, 895 KB

english, 2013

38

Unraveling modulators of platelet reactivity in cardiovascular patients using omics strategies: Towards a network biology paradigm

Zufferey, Anne, Ibberson, Mark, Reny, Jean-Luc, Xenarios, Ioannis, Sanchez, Jean-Charles, Fontana, Pierre

Journal:

Advances in Integrative Medicine

Year:

2013

Language:

english

File:

PDF, 2.45 MB

english, 2013

39

DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions

Journal:

Nucleic Acids Research

Year:

2002

Language:

english

File:

PDF, 86 KB

english, 2002

40

Genome-wide profiling of the cardiac transcriptome after myocardial infarction identifies novel heart-specific long non-coding RNAs

Ounzain, S., Micheletti, R., Beckmann, T., Schroen, B., Alexanian, M., Pezzuto, I., Crippa, S., Nemir, M., Sarre, A., Johnson, R., Dauvillier, J., Burdet, F., Ibberson, M., Guigo, R., Xenarios, I., He

Journal:

European Heart Journal

Year:

2015

Language:

english

File:

PDF, 2.46 MB

english, 2015

41

Differentially Phased Leaf Growth and Movements in Arabidopsis Depend on Coordinated Circadian and Light Regulation

Dornbusch, T., Michaud, O., Xenarios, I., Fankhauser, C.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.40 MB

english, 2014

42

Sounds of Practice I

Xenarios, Susan

Journal:

Social Work With Groups

Year:

1988

Language:

english

File:

PDF, 208 KB

english, 1988

43

Valuating the Receiving Waters of Urban Wastewater Systems through a Stakeholder-based Approach

Xenarios, Stefanos, Bithas, Kostas

Journal:

International Journal of Water Resources Development

Year:

2009

Language:

english

File:

PDF, 628 KB

english, 2009

44

Modeling stochasticity and robustness in gene regulatory networks

Garg, A., Mohanram, K., Di Cara, A., De Micheli, G., Xenarios, I.

Journal:

Year:

2009

Language:

english

File:

PDF, 976 KB

english, 2009

45

Alleviating climate change impacts in rural Bangladesh: a PROMETHEE outranking-based approach for prioritizing agricultural interventions

Xenarios, Stefanos, Polatidis, Heracles

Journal:

Environment, Development and Sustainability

Year:

2015

Language:

english

File:

PDF, 1.10 MB

english, 2015

46

TBC1D7 Mutations are Associated with Intellectual Disability, Macrocrania, Patellar Dislocation, and Celiac Disease

Alfaiz, Ali Abdullah, Micale, Lucia, Mandriani, Barbara, Augello, Bartolomeo, Pellico, Maria Teresa, Chrast, Jacqueline, Xenarios, Ioannis, Zelante, Leopoldo, Merla, Giuseppe, Reymond, Alexandre

Journal:

Year:

2014

Language:

english

File:

PDF, 797 KB

english, 2014

47

The Indus and the Ganges: river basins under extreme pressure

Sharma, Bharat, Amarasinghe, Upali, Xueliang, Cai, de Condappa, Devaraj, Shah, Tushaar, Mukherji, Aditi, Bharati, Luna, Ambili, G., Qureshi, Asad, Pant, Dhruba, Xenarios, Stefanos, Singh, R., Smakhtin

Journal:

Water International

Year:

2010

Language:

english

File:

PDF, 1.77 MB

english, 2010

48

Developing an ecological–economic assessment framework for urban wastewater systems: the case of Athens and Vils wastewater systems

Xenarios, Stefanos

Journal:

Urban Water Journal

Year:

2009

Language:

english

File:

PDF, 3.25 MB

english, 2009

49

[IEEE 2007 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society - Lyon, France (2007.08.22-2007.08.26)] 2007 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society - Modeling of Multiple Valued Gene Regulatory Networks

Garg, Abhishek, Mendoza, Luis, Xenarios, Ioannis, DeMicheli, Giovanni

Year:

2007

Language:

english

File:

PDF, 403 KB

english, 2007

50

Genetic Variations and Diseases in UniProtKB/Swiss-Prot: The Ins and Outs of Expert Manual Curation

Famiglietti, Maria Livia, Estreicher, Anne, Gos, Arnaud, Bolleman, Jerven, Géhant, Sébastien, Breuza, Lionel, Bridge, Alan, Poux, Sylvain, Redaschi, Nicole, Bougueleret, Lydie, Xenarios, Ioannis

Journal:

Year:

2014

Language:

english

File:

PDF, 1.12 MB

english, 2014